AU Core Implementation Guide
0.1.0-draft - Draft Australia flag

This page is part of the AU Core Implementation Guide 0.1.0 Draft. It is based on AU Base 4.1.0. For a full list of available versions, see the Directory of published versions

: Observation - COVID Pathology Result - TTL Representation

Page standards status: Informative

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <http://loinc.org/rdf#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/id/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:Observation;
  fhir:nodeRole fhir:treeRoot;
  fhir:Resource.id [ fhir:value "pathresult-covid-1"]; # 
  fhir:Resource.meta [
     fhir:Meta.profile [
       fhir:value "http://hl7.org.au/fhir/core/StructureDefinition/au-core-diagnosticresult-path";
       fhir:index 0;
       fhir:link <http://hl7.org.au/fhir/core/StructureDefinition/au-core-diagnosticresult-path>     ]
  ]; # 
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ];
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: Observation</b><a name=\"pathresult-covid-1\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource Observation &quot;pathresult-covid-1&quot; </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-au-core-diagnosticresult-path.html\">AU Core Pathology Result Observation</a></p></div><p><b>status</b>: final</p><p><b>category</b>: Laboratory <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-observation-category.html\">Observation Category Codes</a>#laboratory)</span>, Microbiology <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.0.0/CodeSystem-v2-0074.html\">diagnosticServiceSectionId</a>#MB)</span></p><p><b>code</b>: 2019-Novel Coronavirus PCR <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://loinc.org/\">LOINC</a>#94309-2)</span></p><p><b>subject</b>: <a href=\"Patient-wang-li.html\">Patient/wang-li</a> &quot; WANG&quot;</p><p><b>effective</b>: 2021-02-15 12:00:00+1000</p><p><b>performer</b>: <span>: PATHOLOGY LAB</span></p><p><b>value</b>: Not detected <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#260415000)</span></p><p><b>note</b>: PATHOLOGY LAB NATA/RCPA accreditation does not cover the SARS-CoV-2 (COVID-19) PCR test., This test is currently under evaluation and has not been fully validated. Failure to detect organism-specific nucleic acids does not exclude the presence of disease due to this agent.</p><p><b>specimen</b>: <a href=\"Specimen-nasoswab.html\">Specimen/nasoswab</a></p></div>"
  ]; # 
  fhir:Observation.status [ fhir:value "final"]; # 
  fhir:Observation.category [
     fhir:index 0;
     fhir:CodeableConcept.coding [
       fhir:index 0;
       fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/observation-category" ];
       fhir:Coding.code [ fhir:value "laboratory" ]     ]
  ], [
     fhir:index 1;
     fhir:CodeableConcept.coding [
       fhir:index 0;
       fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v2-0074" ];
       fhir:Coding.code [ fhir:value "MB" ]     ]
  ]; # 
  fhir:Observation.code [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a loinc:94309-2;
       fhir:Coding.system [ fhir:value "http://loinc.org" ];
       fhir:Coding.code [ fhir:value "94309-2" ]     ];
     fhir:CodeableConcept.text [ fhir:value "2019-Novel Coronavirus PCR" ]
  ]; # 
  fhir:Observation.subject [
     fhir:Reference.reference [ fhir:value "Patient/wang-li" ]
  ]; # 
  fhir:Observation.effectiveDateTime [ fhir:value "2021-02-15T12:00:00+10:00"^^xsd:dateTime]; # 
  fhir:Observation.performer [
     fhir:index 0;
     fhir:Reference.display [ fhir:value "PATHOLOGY LAB" ]
  ]; # 
  fhir:Observation.valueCodeableConcept [
     fhir:CodeableConcept.coding [
       fhir:index 0;
       a sct:260415000;
       fhir:Coding.system [ fhir:value "http://snomed.info/sct" ];
       fhir:Coding.code [ fhir:value "260415000" ];
       fhir:Coding.display [ fhir:value "Not detected" ]     ];
     fhir:CodeableConcept.text [ fhir:value "Not detected" ]
  ]; # 
  fhir:Observation.note [
     fhir:index 0;
     fhir:Annotation.text [ fhir:value "PATHOLOGY LAB NATA/RCPA accreditation does not cover the SARS-CoV-2 (COVID-19) PCR test." ]
  ], [
     fhir:index 1;
     fhir:Annotation.text [ fhir:value "This test is currently under evaluation and has not been fully validated. Failure to detect organism-specific nucleic acids does not exclude the presence of disease due to this agent." ]
  ]; # 
  fhir:Observation.specimen [
     fhir:Reference.reference [ fhir:value "Specimen/nasoswab" ]
  ]. # 

# - ontology header ------------------------------------------------------------

 a owl:Ontology;
  owl:imports fhir:fhir.ttl.