HL7 Australia Implementation Guide: home
This page is part of the RCPA Cancer Protocols IG (v0.1.0: Release 1 Draft) based on FHIR R3. . For a full list of available versions, see the Directory of published versions 
| Logical Model | Mappings | FHIR Resources | HL7 V2.4 Messaging |
Thise is the mapping between FHIR resources and the Colorectal Logical Model. For context, see the explanation of how this guide works.
| Defining URL: | http://fhir.hl7.org.au/fhir/rcpa/StructureMap/ColorectalMap |
| Name: | Colorectal --> DiagnosticReport Mapping |
| Source Resource | XML / JSON / Turtle |
| Source | Target |
| Input: Colorectal | |
| Colorectal | new DiagnosticReport |
| Colorectal.subject | DiagnosticReport.subject |
| Colorectal.requester | new ProcedureRequest, ProcedureRequest.requester.agent |
| Colorectal.performer | DiagnosticReport.performer.actor |
| Colorectal.preAnalytic | new Observation, Observation.code = http://cap.org/protocols#28592.1000043(Colorectal.preAnalytic) |
| Colorectal.preAnalytic.clinicalInformation | new ProcedureRequest, ProcedureRequest.reasonCode.text |
| Colorectal.preAnalytic.operatingSurgeonDetails | new Specimen, Specimen.collection.collector |
| Colorectal.preAnalytic.perforation | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#28289.1000043(Colorectal.preAnalytic.perforation)) |
| Colorectal.preAnalytic.natureOfPerforation | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#28296.1000043(Colorectal.preAnalytic.natureOfPerforation)) |
| Colorectal.preAnalytic.clinicalObstruction | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#28292.1000043(Colorectal.preAnalytic.clinicalObstruction)) |
| Colorectal.preAnalytic.tumourLocation | new Observation.value (--> CodeableConcept) (code = LOINC#33725-3(Tumor site by CAP cancer protocols)) |
| Colorectal.preAnalytic.synchronousTumours | new Observation.value (code = http://cap.org/protocols#28346.1000043(Colorectal.preAnalytic.synchronousTumours)) |
| Colorectal.preAnalytic.distanceAnalVerge | new Observation.value (code = LOINC#33748-5(Distance from anal verge by CAP cancer protocols)) |
| Colorectal.preAnalytic.typeOfOperation | new Observation, Observation.code = LOINC#29306-8(Surgery procedure) |
| Colorectal.preAnalytic.typeOfOperation.code | Observation.value.coding (--> Coding) |
| Colorectal.preAnalytic.typeOfOperation.other | Observation.value.text |
| Colorectal.preAnalytic.anteriorResectionType | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#28278.1000043(Colorectal.preAnalytic.anteriorResectionType)) |
| Colorectal.preAnalytic.preoperativeRadiotherapy | new Observation.value (--> CodeableConcept) (code = LOINC#LN-RCPA-00063) |
| Colorectal.preAnalytic.typeOfCourse | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#28286.1000043(Colorectal.preAnalytic.typeOfCourse)) |
| Colorectal.preAnalytic.surgeonsOpinion | new Observation.value (code = http://cap.org/protocols#28295.1000043(Colorectal.preAnalytic.surgeonsOpinion)) |
| Colorectal.preAnalytic.adjacentOrgans | new Observation.value (code = http://cap.org/protocols#28336.1000043(Colorectal.preAnalytic.adjacentOrgans)) |
| Colorectal.preAnalytic.newPrimaryOrRecurrence | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#28337.1000043(Colorectal.preAnalytic.newPrimaryOrRecurrence)) |
| Colorectal.preAnalytic.RecurrenceDescription | new Observation.value (code = http://something#sort-this-1) |
| Colorectal.preAnalytic.pathologyAccessionNumber | new Observation.value (code = http://something#sort-this-2) |
| Colorectal.preAnalytic.otherRelevantDetails | new Observation.value (code = http://cap.org/protocols#28301.1000043(Colorectal.preAnalytic.otherRelevantDetails)) |
| Colorectal.macro | new Observation, Observation.code = http://cap.org/protocols#27906.1000043(Colorectal.macro) |
| Colorectal.macro.specimenLength | new Observation.value (code = SNOMED CT#384606002(Length of specimen (observable entity))) |
| Colorectal.macro.tumourSite | new Observation.value (--> CodeableConcept) (code = LOINC#33725-3(Tumor site by CAP cancer protocols)) |
| Colorectal.macro.maxTumourDiameter | new Observation.value (code = LOINC#21889-1(Size Tumor)) |
| Colorectal.macro.distanceNearerProxOrDistal | new Observation.value (code = LOINC#81175-2(Distance of tumor from closest margin [Length] in Specimen by Macroscopy)) |
| Colorectal.macro.distNonperitonCircumMargin | new Observation.value (code = http://cap.org/protocols#28358.1000043(Colorectal.macro.distNonperitonCircumMargin)) |
| Colorectal.macro.tumourPerforation | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#27963.1000043(Colorectal.macro.tumourPerforation)) |
| Colorectal.macro.relToAntPeritonealReflection | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#28362.1000043(Colorectal.macro.relToAntPeritonealReflection)) |
| Colorectal.macro.intactnessOfMesorectum | new Observation.value (--> CodeableConcept) (code = LOINC#33730-3(Resection completeness in Mesorectum Qualitative by CAP cancer protocols)) |
| Colorectal.macro.peritoneum | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#28369.1000043(Colorectal.macro.peritoneum)) |
| Colorectal.macro.lymphNodes | new Observation.value (--> CodeableConcept) (code = SNOMED CT#364108009(Lymph node observable)) |
| Colorectal.macro.noLymphNodesPerCassette | new Observation.value (code = SNOMED CT#444025001(Number of lymph nodes examined (observable entity))) |
| Colorectal.macro.polyps | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#28376.1000043(Colorectal.macro.polyps)) |
| Colorectal.macro.polypSummary | new Observation.value (code = http://cap.org/protocols#28379.1000043(Colorectal.macro.polypSummary)) |
| Colorectal.macro.otherMacroComments | new Observation.value (code = LOINC#22634-0(Pathology report gross observation Narrative)) |
| Colorectal.macro.natureAndSiteOfBlocks | new Observation.value (code = LOINC#81178-6(Tissue block description and site Narrative)) |
| Colorectal.micro | new Observation, Observation.code = http://cap.org/protocols#27973.1000043(Colorectal.micro) |
| Colorectal.micro.tumourType | new Observation.value (--> CodeableConcept) (code = SNOMED CT#371441004(Histologic type (observable entity))) |
| Colorectal.micro.histologicalGrade | new Observation.value (--> CodeableConcept) (code = LOINC#33732-9(Histology grade by CAP cancer protocols)) |
| Colorectal.micro.maxDegreeLocalInvasion | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#28534.1000043(Colorectal.micro.maxDegreeLocalInvasion)) |
| Colorectal.micro.proximalOrDistalResectionMargins | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#28348.1000043(Colorectal.micro.proximalOrDistalResectionMargins)) |
| Colorectal.micro.involvedMargins | new Observation.value (--> CodeableConcept) (code = LOINC#44699-7(Extent of margin involvement by CAP cancer protocols)) |
| Colorectal.micro.marginsMicroClearance | new Observation.value (code = http://cap.org/protocols#28396.1000043(Colorectal.micro.marginsMicroClearance)) |
| Colorectal.micro.nonperitonealisedCircumMargin | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#28354.1000043(Colorectal.micro.nonperitonealisedCircumMargin)) |
| Colorectal.micro.microClearanceRectum | new Observation.value (code = http://cap.org/protocols#28400.1000043(Colorectal.micro.microClearanceRectum)) |
| Colorectal.micro.lymphNodeInvolvement | new Observation.value (--> CodeableConcept) (code = LOINC#21892-5(Lymph node involvement Cancer)) |
| Colorectal.micro.lymphNodesDetails | new Observation, Observation.code = http://cap.org/protocols#28404.1000043(Colorectal.micro.lymphNodesDetails) |
| Colorectal.micro.lymphNodesDetails.site | new Observation.value (code = LOINC#39111-0(Body site)) |
| Colorectal.micro.lymphNodesDetails.numPos | new Observation.value (code = LOINC#21893-3(Regional lymph nodes positive [#] Specimen)) |
| Colorectal.micro.lymphNodesDetails.numExamined | new Observation.value (code = LOINC#21894-1(Regional lymph nodes examined [#] Specimen)) |
| Colorectal.micro.extramuralTumourDeposits | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#28392.1000043(Colorectal.micro.extramuralTumourDeposits)) |
| Colorectal.micro.apicalNodeInvolvement | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#28407.1000043(Colorectal.micro.apicalNodeInvolvement)) |
| Colorectal.micro.venousSmallVesselInvasion | new Observation.value (code = LOINC#33761-8(Venous + Lymphatic small vessel invasion by CAP cancer protocols)) |
| Colorectal.micro.intramuralVeinInvasion | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#28412.1000043(Colorectal.micro.intramuralVeinInvasion)) |
| Colorectal.micro.extramuralVeinInvasion | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#28415.1000043(Colorectal.micro.extramuralVeinInvasion)) |
| Colorectal.micro.smallVesselInvasion | new Observation.value (--> CodeableConcept) (code = LOINC#33739-4(Lymphatic.small vessel.invasion by CAP cancer protocols)) |
| Colorectal.micro.perineuralInvasion | new Observation.value (--> CodeableConcept) (code = LOINC#33741-0(Perineural invasion by CAP cancer protocols)) |
| Colorectal.micro.histoConfDistMetastases | new Observation.value (--> CodeableConcept) (code = SNOMED CT#399608002(Status of distant metastasis (observable entity))) |
| Colorectal.micro.histoConfDistMetastasesSite | new Observation.value (code = LOINC#21920-4(Site of distant metastasis Cancer)) |
| Colorectal.micro.relCoexistPathabnorm | new Observation, Observation.code = SNOMED CT#371498006(Additional pathologic finding in tumor specimen (observable entity)) |
| Colorectal.micro.relCoexistPathabnorm.code | Observation.value.coding (--> Coding) |
| Colorectal.micro.relCoexistPathabnorm.other | Observation.value.text |
| Colorectal.micro.polypDetails | new Observation.value (code = LOINC#33745-1(Polyps by CAP cancer protocols)) |
| Colorectal.micro.dysplasia | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#28426.1000043(Colorectal.micro.dysplasia)) |
| Colorectal.micro.otherAbnormality | new Observation.value (code = http://test.what/here#something) |
| Colorectal.micro.microResidualTumourStatus | new Observation.value (code = http://cap.org/protocols#28425.1000043(Colorectal.micro.microResidualTumourStatus)) |
| Colorectal.micro.neoadjuvantTherapy | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#28123.1000043(Colorectal.micro.neoadjuvantTherapy)) |
| Colorectal.micro.microComments | new Observation.value (code = LOINC#22635-7(Pathology report microscopic observation Narrative Other stain)) |
| Colorectal.ancillaryTests | new Observation, Observation.code = http://cap.org/protocols#28156.1000043(Colorectal.ancillaryTests) |
| Colorectal.ancillaryTests.mlh1 | new Observation.value (--> CodeableConcept) (code = LOINC#50322-7(MLH-1 Ag [Presence] in Tissue by Immune stain)) |
| Colorectal.ancillaryTests.pms2 | new Observation.value (--> CodeableConcept) (code = LOINC#50328-4(PMS-2 Ag [Presence] in Tissue by Immune stain)) |
| Colorectal.ancillaryTests.msh2 | new Observation.value (--> CodeableConcept) (code = LOINC#50323-5(MSH-2 Ag [Presence] in Tissue by Immune stain)) |
| Colorectal.ancillaryTests.msh6 | new Observation.value (--> CodeableConcept) (code = LOINC#50324-3(MSH-6 Ag [Presence] in Tissue by Immune stain)) |
| Colorectal.ancillaryTests.comments | new Observation.value (code = http://cap.org/protocols#28436.1000043(Colorectal.ancillaryTests.comments)) |
| Colorectal.ancillaryTests.msi | new Observation, Observation.code = http://cap.org/protocols#28399.1000043(Colorectal.ancillaryTests.msi) |
| Colorectal.ancillaryTests.msi.code | new Observation.value (--> CodeableConcept) (code = LOINC#43368-0(Microsatellite instability [Identifier] in Tissue by Molecular genetics method Nominal)) |
| Colorectal.ancillaryTests.msi.comments | new Observation.value (code = http://cap.org/protocols#28453.1000043(Colorectal.ancillaryTests.msi.comments)) |
| Colorectal.ancillaryTests.msi.labDetails | new Observation.value (code = http://cap.org/protocols#28447.1000043(Colorectal.ancillaryTests.msi.labDetails)) |
| Colorectal.ancillaryTests.braf | new Observation, Observation.code = http://cap.org/protocols#28454.1000043(Colorectal.ancillaryTests.braf) |
| Colorectal.ancillaryTests.braf.code | new Observation.value (--> CodeableConcept) (code = LOINC#58483-9(BRAF gene mutations found [Identifier] in Blood or Tissue by Molecular genetics method Nominal)) |
| Colorectal.ancillaryTests.braf.comments | new Observation.value (code = http://cap.org/protocols#28460.1000043(Colorectal.ancillaryTests.braf.comments)) |
| Colorectal.ancillaryTests.braf.labDetails | new Observation.value (code = http://cap.org/protocols#28459.1000043(Colorectal.ancillaryTests.braf.labDetails)) |
| Colorectal.ancillaryTests.kras | new Observation, Observation.code = http://cap.org/protocols#28461.1000043(Colorectal.ancillaryTests.kras) |
| Colorectal.ancillaryTests.kras.code | new Observation.value (--> CodeableConcept) (code = LOINC#21703-4(KRAS gene mutations tested for in Blood or Tissue by Molecular genetics method Nominal)) |
| Colorectal.ancillaryTests.kras.comments | new Observation.value (code = http://cap.org/protocols#28465.1000043(Colorectal.ancillaryTests.kras.comments)) |
| Colorectal.ancillaryTests.kras.labDetails | new Observation.value (code = http://cap.org/protocols#28466.1000043(Colorectal.ancillaryTests.kras.labDetails)) |
| Colorectal.synthesisOverview | new Observation, Observation.code = http://cap.org/protocols#28253.1000043(Colorectal.synthesisOverview) |
| Colorectal.synthesisOverview.tumourStageT | new Observation.value (--> CodeableConcept) (code = SNOMED CT#78873005(Tumour stages)) |
| Colorectal.synthesisOverview.tumourStageN | new Observation.value (--> CodeableConcept) (code = SNOMED CT#277206009(N category (observable entity))) |
| Colorectal.synthesisOverview.tumourStageM | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#28552.1000043(Colorectal.synthesisOverview.tumourStageM)) |
| Colorectal.synthesisOverview.tumourStageGrouping | new Observation.value (--> CodeableConcept) (code = LOINC#21902-2(Stage group.pathology Cancer)) |
| Colorectal.synthesisOverview.tumourStagingSystem | new Observation.value (code = SNOMED CT#443941007(Edition of American Joint Commission on Cancer, Cancer Staging Manual used for TNM staging (observable entity))) |
| Colorectal.synthesisOverview.diagnosticSummary | new Observation.value (code = LOINC#22637-3(Pathology report final diagnosis Narrative)) |
| Colorectal.synthesisOverview.newPrimaryOrRecurrence | new Observation.value (--> CodeableConcept) (code = http://cap.org/protocols#28472.1000043(Colorectal.synthesisOverview.newPrimaryOrRecurrence)) |
| Colorectal.synthesisOverview.newDescription | new Observation.value (code = http://cap.org/protocols#28473.1000043(Colorectal.synthesisOverview.newDescription)) |
| Colorectal.synthesisOverview.overarchingComment | new Observation.value (code = LOINC#22638-1(Pathology report comments [Interpretation] Narrative)) |
map "http://fhir.hl7.org.au/fhir/rcpa/StructureMap/ColorectalMap" = "Colorectal --> DiagnosticReport Mapping"
uses "http://fhir.hl7.org.au/fhir/rcpa/StructureDefinition/Colorectal" as source
group for types Colorectal
input source : Colorectal as source
Colorectal : for source make create("DiagnosticReport") as cdr, cdr.status = "final", cdr.code = cc("http://snomed.info/sct", "todo") then {
Colorectal.subject : for source.subject : Reference 1..1 as v make cdr.subject = v
Colorectal.requester : for source.requester : Reference 0..1 as v make create("ProcedureRequest") as do, cdr.request = reference(do), do.subject = ("source.subject"), do.requester as prr, prr.agent = v
Colorectal.performer : for source.performer : Reference 0..1 as v make cdr.performer as prr, prr.actor = v
Colorectal.preAnalytic : for source.preAnalytic : code 0..1 as spa make create("Observation") as tpa, cdr.result = reference(tpa), tpa.subject = ("source.subject"), tpa.status = "final", tpa.code = cc("http://cap.org/protocols", "28592.1000043") then {
Colorectal.preAnalytic.clinicalInformation : for spa.clinicalInformation as v make create("ProcedureRequest") as do, do.reasonCode as dr, dr.text = v
Colorectal.preAnalytic.operatingSurgeonDetails : for spa.operatingSurgeonDetails : Reference 0..1 as v make create("Specimen") as sp, cdr.specimen = reference(sp), sp.subject = ("source.subject"), sp.collection as tc, tc.collector = v
Colorectal.preAnalytic.perforation : for spa.perforation : code 0..1 as v make create("Observation") as obs, tpa.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28289.1000043"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/present-absent-ns", v)
Colorectal.preAnalytic.natureOfPerforation : for spa.natureOfPerforation : code 0..1 as v make create("Observation") as obs, tpa.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28296.1000043"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/perforation-type", v)
Colorectal.preAnalytic.clinicalObstruction : for spa.clinicalObstruction : code 0..1 as v make create("Observation") as obs, tpa.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28292.1000043"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/present-absent-ns", v)
Colorectal.preAnalytic.tumourLocation : for spa.tumourLocation : code 0..1 as v make create("Observation") as obs, tpa.related as tpar, tpar.type = "has-member", tpar.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "33725-3"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/crc-tumour-location", v)
Colorectal.preAnalytic.synchronousTumours : for spa.synchronousTumours : code 0..1 as v make create("Observation") as obs, tpa.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28346.1000043"), obs.value = v
Colorectal.preAnalytic.distanceAnalVerge : for spa.distanceAnalVerge : code 0..1 as v make create("Observation") as obs, tpa.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "33748-5"), obs.value = v
Colorectal.preAnalytic.typeOfOperation : for spa.typeOfOperation : code 0..1 as sto make create("Observation") as obs, tpa.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "29306-8"), obs.value = create("CodeableConcept") as tcc then {
Colorectal.preAnalytic.typeOfOperation.code : for sto.code : code 0..1 as v make tcc.coding = c("http://snomed.info/sct", v)
Colorectal.preAnalytic.typeOfOperation.other : for sto.other : code 0..1 as v make tcc.text = v
}
Colorectal.preAnalytic.anteriorResectionType : for spa.anteriorResectionType : code 0..1 as v make create("Observation") as obs, tpa.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28278.1000043", "Anterior resection type"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/hi-lo-ultralo", v)
Colorectal.preAnalytic.preoperativeRadiotherapy : for spa.preoperativeRadiotherapy : code 0..1 as v make create("Observation") as obs, tpa.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "LN-RCPA-00063"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/yes-no-ns", v)
Colorectal.preAnalytic.typeOfCourse : for spa.typeOfCourse : code 0..1 as v make create("Observation") as obs, tpa.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28286.1000043", "Type of course"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/course-type", v)
Colorectal.preAnalytic.surgeonsOpinion : for spa.surgeonsOpinion : code 0..1 as v make create("Observation") as obs, tpa.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28295.1000043", "Surgeons opinion of residual cancer"), obs.value = v
Colorectal.preAnalytic.adjacentOrgans : for spa.adjacentOrgans : code 0..1 as v make create("Observation") as obs, tpa.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28336.1000043", "Adjacent organ involvement"), obs.value = v
Colorectal.preAnalytic.newPrimaryOrRecurrence : for spa.newPrimaryOrRecurrence : code 0..1 as v make create("Observation") as obs, tpa.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28337.1000043", "New primary cancer or recurrence"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/cancer-primary-or-recurrence", v)
Colorectal.preAnalytic.RecurrenceDescription : for spa.RecurrenceDescription : code 0..1 as v make create("Observation") as obs, tpa.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://something", "sort-this-1"), obs.value = v
Colorectal.preAnalytic.pathologyAccessionNumber : for spa.pathologyAccessionNumber : code 0..1 as v make create("Observation") as obs, tpa.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://something", "sort-this-2"), obs.value = v
Colorectal.preAnalytic.otherRelevantDetails : for spa.otherRelevantDetails : code 0..1 as v make create("Observation") as obs, tpa.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28301.1000043", "Other details"), obs.value = v
}
Colorectal.macro : for source.macro : code 0..1 as sma make create("Observation") as tma, cdr.result = reference(tma), tma.subject = ("source.subject"), tma.status = "final", tma.code = cc("http://cap.org/protocols", "27906.1000043", "Macroscopy") then {
Colorectal.macro.specimenLength : for sma.specimenLength : code 0..1 as v make create("Observation") as obs, tma.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://snomed.info/sct", "384606002"), obs.value = v
Colorectal.macro.tumourSite : for sma.tumourSite : code 0..1 as v make create("Observation") as obs, tma.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "33725-3"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/crc-tumour-location", v)
Colorectal.macro.maxTumourDiameter : for sma.maxTumourDiameter : code 0..1 as v make create("Observation") as obs, tma.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "21889-1"), obs.value = v
Colorectal.macro.distanceNearerProxOrDistal : for sma.distanceNearerProxOrDistal : code 0..1 as v make create("Observation") as obs, tma.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "81175-2"), obs.value = v
Colorectal.macro.distNonperitonCircumMargin : for sma.distNonperitonCircumMargin : code 0..1 as v make create("Observation") as obs, tma.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28358.1000043", "Distance of tumour to the nonperitonealised circumferential margin"), obs.value = v
Colorectal.macro.tumourPerforation : for sma.tumourPerforation : code 0..1 as v make create("Observation") as obs, tma.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "27963.1000043", "Tumour perforation"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/present-absent", v)
Colorectal.macro.relToAntPeritonealReflection : for sma.relToAntPeritonealReflection : code 0..1 as v make create("Observation") as obs, tma.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28362.1000043", "Site of rectal tumour in relation to the anterior level of the peritoneal reflection"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/crc-rel-anterior-peritoneal-reflection", v)
Colorectal.macro.intactnessOfMesorectum : for sma.intactnessOfMesorectum : code 0..1 as v make create("Observation") as obs, tma.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "33730-3"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/crc-intactness-of-mesorectum", v)
Colorectal.macro.peritoneum : for sma.peritoneum : code 0..1 as v make create("Observation") as obs, tma.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28369.1000043", "Peritoneum"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/crc-peritoneum-invasion", v)
Colorectal.macro.lymphNodes : for sma.lymphNodes : code 0..1 as v make create("Observation") as obs, tma.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://snomed.info/sct", "364108009"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/received-notreceived", v)
Colorectal.macro.noLymphNodesPerCassette : for sma.noLymphNodesPerCassette : code 0..1 as v make create("Observation") as obs, tma.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://snomed.info/sct", "444025001"), obs.value = v
Colorectal.macro.polyps : for sma.polyps : code 0..1 as v make create("Observation") as obs, tma.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28376.1000043", "The presence or absence of polyps should be recorded"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/present-absent-na", v)
Colorectal.macro.polypSummary : for sma.polypSummary : code 0..1 as v make create("Observation") as obs, tma.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28379.1000043", "The number, diameter and gross configuration of polyps should be summarised"), obs.value = v
Colorectal.macro.otherMacroComments : for sma.otherMacroComments : code 0..1 as v make create("Observation") as obs, tma.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "22634-0"), obs.value = v
Colorectal.macro.natureAndSiteOfBlocks : for sma.natureAndSiteOfBlocks : code 0..1 as v make create("Observation") as obs, tma.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "81178-6"), obs.value = v
}
Colorectal.micro : for source.micro : code 0..1 as smi make create("Observation") as tmi, cdr.result = reference(tmi), tmi.subject = ("source.subject"), tmi.status = "final", tmi.code = cc("http://cap.org/protocols", "27973.1000043", "Microscopy") then {
Colorectal.micro.tumourType : for smi.tumourType : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://snomed.info/sct", "371441004"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/crc-tumour-type", v)
Colorectal.micro.histologicalGrade : for smi.histologicalGrade : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "33732-9"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/histological-grade", v)
Colorectal.micro.maxDegreeLocalInvasion : for smi.maxDegreeLocalInvasion : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28534.1000043", "Maximum degree of local invasion into or through the bowel wall"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/crc-deg-inv-bowel-wall", v)
Colorectal.micro.proximalOrDistalResectionMargins : for smi.proximalOrDistalResectionMargins : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28348.1000043", "Involvement of the proximal or distal resection (cut-end) margins"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/involved-notinvolved", v)
Colorectal.micro.involvedMargins : for smi.involvedMargins : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "44699-7"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/distal-proximal", v)
Colorectal.micro.marginsMicroClearance : for smi.marginsMicroClearance : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28396.1000043", "Microscopic Clearance"), obs.value = v
Colorectal.micro.nonperitonealisedCircumMargin : for smi.nonperitonealisedCircumMargin : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28354.1000043", "Status of the nonperitonealised circumferential margin (rectal tumours)"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/involved-notinvolved", v)
Colorectal.micro.microClearanceRectum : for smi.microClearanceRectum : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28400.1000043", "Microscopic Clearance"), obs.value = v
Colorectal.micro.lymphNodeInvolvement : for smi.lymphNodeInvolvement : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "21892-5"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/present-absent-na", v)
Colorectal.micro.lymphNodesDetails : for smi.lymphNodesDetails : code 0..1 as slnd make create("Observation") as tlnd, tmi.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(tlnd), tlnd.subject = ("source.subject"), tlnd.status = "final", tlnd.code = cc("http://cap.org/protocols", "28404.1000043", "Site(s) and numbers of lymph nodes") then {
Colorectal.micro.lymphNodesDetails.site : for slnd.site : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "39111-0"), obs.value = v
Colorectal.micro.lymphNodesDetails.numPos : for slnd.numPos : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "21893-3"), obs.value = v
Colorectal.micro.lymphNodesDetails.numExamined : for slnd.numExamined : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "21894-1"), obs.value = v
}
Colorectal.micro.extramuralTumourDeposits : for smi.extramuralTumourDeposits : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28392.1000043", "Isolated extra-mural tumour deposits"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/present-absent-na", v)
Colorectal.micro.apicalNodeInvolvement : for smi.apicalNodeInvolvement : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28407.1000043", "Apical node involvement"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/present-absent-na", v)
Colorectal.micro.venousSmallVesselInvasion : for smi.venousSmallVesselInvasion : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "33761-8"), obs.value = v
Colorectal.micro.intramuralVeinInvasion : for smi.intramuralVeinInvasion : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28412.1000043", "Intramural vein invasion"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/intramural-vein-invasion", v)
Colorectal.micro.extramuralVeinInvasion : for smi.extramuralVeinInvasion : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28415.1000043", "Extramural vein invasion"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/extramural-vein-invasion", v)
Colorectal.micro.smallVesselInvasion : for smi.smallVesselInvasion : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "33739-4"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/small-vessel-invasion", v)
Colorectal.micro.perineuralInvasion : for smi.perineuralInvasion : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "33741-0"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/perineural-invasion", v)
Colorectal.micro.histoConfDistMetastases : for smi.histoConfDistMetastases : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://snomed.info/sct", "399608002"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/present-absent-ns", v)
Colorectal.micro.histoConfDistMetastasesSite : for smi.histoConfDistMetastasesSite : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "21920-4"), obs.value = v
Colorectal.micro.relCoexistPathabnorm : for smi.relCoexistPathabnorm : code 0..1 as scc make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://snomed.info/sct", "371498006"), obs.value = create("CodeableConcept") as tcc then {
Colorectal.micro.relCoexistPathabnorm.code : for scc.code : code 0..1 as v make tcc.coding = c("http://snomed.info/sct", v)
Colorectal.micro.relCoexistPathabnorm.other : for scc.other : code 0..1 as v make tcc.text = v
}
Colorectal.micro.polypDetails : for smi.polypDetails : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "33745-1"), obs.value = v
Colorectal.micro.dysplasia : for smi.dysplasia : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28426.1000043", "Dysplasia"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/dysplasia", v)
Colorectal.micro.otherAbnormality : for smi.otherAbnormality : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://test.what/here", "something"), obs.value = v
Colorectal.micro.microResidualTumourStatus : for smi.microResidualTumourStatus : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28425.1000043", "Microscopic residual tumour status (completeness of resection)"), obs.value = v
Colorectal.micro.neoadjuvantTherapy : for smi.neoadjuvantTherapy : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28123.1000043", "Response to neoadjuvant therapy"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/response-to-neoadjuvant-therapy", v)
Colorectal.micro.microComments : for smi.microComments : code 0..1 as v make create("Observation") as obs, obs.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "22635-7"), obs.value = v
}
Colorectal.ancillaryTests : for source.ancillaryTests : code 0..1 as sat make create("Observation") as tat, cdr.result = reference(tat), tat.subject = ("source.subject"), tat.status = "final", tat.code = cc("http://cap.org/protocols", "28156.1000043", "Ancillary test findings") then {
Colorectal.ancillaryTests.mlh1 : for sat.mlh1 : code 0..1 as v make create("Observation") as obs, tat.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "50322-7"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/stain-type", v)
Colorectal.ancillaryTests.pms2 : for sat.pms2 : code 0..1 as v make create("Observation") as obs, tat.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "50328-4"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/stain-type", v)
Colorectal.ancillaryTests.msh2 : for sat.msh2 : code 0..1 as v make create("Observation") as obs, tat.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "50323-5"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/stain-type", v)
Colorectal.ancillaryTests.msh6 : for sat.msh6 : code 0..1 as v make create("Observation") as obs, tat.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "50324-3"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/stain-type", v)
Colorectal.ancillaryTests.comments : for sat.comments : code 0..1 as v make create("Observation") as obs, tat.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28436.1000043", "Mismatch repair enzyme comments"), obs.value = v
Colorectal.ancillaryTests.msi : for sat.msi : code 0..1 as smsi make create("Observation") as tmsi, tat.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(tmsi), tmsi.subject = ("source.subject"), tmsi.status = "final", tmsi.code = cc("http://cap.org/protocols", "28399.1000043", "Microsatellite instability (MSI)") then {
Colorectal.ancillaryTests.msi.code : for smsi.code : code 0..1 as v make create("Observation") as obs, tmsi.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "43368-0"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/msi-options", v)
Colorectal.ancillaryTests.msi.comments : for smsi.comments : code 0..1 as v make create("Observation") as obs, tmsi.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28453.1000043", "Microsatellite instability (MSI) comments"), obs.value = v
Colorectal.ancillaryTests.msi.labDetails : for smsi.labDetails : code 0..1 as v make create("Observation") as obs, tmsi.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28447.1000043", "MSI laboratory performing test and report number"), obs.value = v
}
Colorectal.ancillaryTests.braf : for sat.braf : code 0..1 as sbraf make create("Observation") as tbraf, tat.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(tbraf), tbraf.subject = ("source.subject"), tbraf.status = "final", tbraf.code = cc("http://cap.org/protocols", "28454.1000043", "BRAF (V600E mutation)") then {
Colorectal.ancillaryTests.braf.code : for sbraf.code : code 0..1 as v make create("Observation") as obs, tbraf.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "58483-9"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/mutated-wildtype", v)
Colorectal.ancillaryTests.braf.comments : for sbraf.comments : code 0..1 as v make create("Observation") as obs, tbraf.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28460.1000043", "BRAF (V600E mutation) comments"), obs.value = v
Colorectal.ancillaryTests.braf.labDetails : for sbraf.labDetails : code 0..1 as v make create("Observation") as obs, tbraf.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28459.1000043", "BRAF (V600E mutation) laboratory performing test and report number"), obs.value = v
}
Colorectal.ancillaryTests.kras : for sat.kras : code 0..1 as skras make create("Observation") as tkras, tat.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(tkras), tkras.subject = ("source.subject"), tkras.status = "final", tkras.code = cc("http://cap.org/protocols", "28461.1000043", "KRAS gene mutation (codons 12 and 13)") then {
Colorectal.ancillaryTests.kras.code : for skras.code : code 0..1 as v make create("Observation") as obs, tkras.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "21703-4"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/mutated-wildtype", v)
Colorectal.ancillaryTests.kras.comments : for skras.comments : code 0..1 as v make create("Observation") as obs, tkras.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28465.1000043", "KRAS gene mutation (codons 12 and 13) comments"), obs.value = v
Colorectal.ancillaryTests.kras.labDetails : for skras.labDetails : code 0..1 as v make create("Observation") as obs, tkras.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28466.1000043", "KRAS gene mutation (codons 12 and 13) laboratory performing test and report number"), obs.value = v
}
}
Colorectal.synthesisOverview : for source.synthesisOverview : code 0..1 as sso make create("Observation") as tto, cdr.result = reference(tto), tto.subject = ("source.subject"), tto.status = "final", tto.code = cc("http://cap.org/protocols", "28253.1000043", "Synthesis and Overview") then {
Colorectal.synthesisOverview.tumourStageT : for sso.tumourStageT : code 0..1 as v make create("Observation") as obs, tto.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://snomed.info/sct", "78873005"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/crc-tumour-stage-t", v)
Colorectal.synthesisOverview.tumourStageN : for sso.tumourStageN : code 0..1 as v make create("Observation") as obs, tto.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://snomed.info/sct", "277206009"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/crc-tumour-stage-n", v)
Colorectal.synthesisOverview.tumourStageM : for sso.tumourStageM : code 0..1 as v make create("Observation") as obs, tto.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28552.1000043", "M"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/crc-tumour-stage-m", v)
Colorectal.synthesisOverview.tumourStageGrouping : for sso.tumourStageGrouping : code 0..1 as v make create("Observation") as obs, tto.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "21902-2"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/crc-tumour-stage-grouping", v)
Colorectal.synthesisOverview.tumourStagingSystem : for sso.tumourStagingSystem : code 0..1 as v make create("Observation") as obs, tto.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://snomed.info/sct", "443941007"), obs.value = v
Colorectal.synthesisOverview.diagnosticSummary : for sso.diagnosticSummary : code 0..1 as v make create("Observation") as obs, tto.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "22637-3"), obs.value = v
Colorectal.synthesisOverview.newPrimaryOrRecurrence : for sso.newPrimaryOrRecurrence : code 0..1 as v make create("Observation") as obs, tto.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28472.1000043", "New primary cancer or recurrence"), obs.value = cc("http://fhir.hl7.org.au/fhir/rcpa/ValueSet/new-cancer-or-recurrence", v)
Colorectal.synthesisOverview.newDescription : for sso.newDescription : code 0..1 as v make create("Observation") as obs, tto.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://cap.org/protocols", "28473.1000043", "Describe"), obs.value = v
Colorectal.synthesisOverview.overarchingComment : for sso.overarchingComment : code 0..1 as v make create("Observation") as obs, tto.related as xtmp, xtmp.type = "has-member", xtmp.target = reference(obs), obs.subject = ("source.subject"), obs.status = "final", obs.code = cc("http://loinc.org", "22638-1"), obs.value = v
}
}
endgroup
© ADHA/HL7 Australia 2014+. Based on FHIR (v) generated on .
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