AU Core Implementation Guide
0.1.0-draft - Draft
Publication Build: This will be filled in by the publication tooling
Official URL: http://hl7.org.au/fhir/core/StructureDefinition/au-core-specimen | Version: 0.1.0-draft | |||
Standards status: Draft | Maturity Level: 0 | Computable Name: AUCoreSpecimen | ||
Copyright/Legal: HL7 Australia© 2018+; Licensed Under Creative Commons No Rights Reserved. |
This profile sets minimum expectations for a Specimen resource to record, search, and fetch specimens associated with a patient. It is based on the AU Base Specimen profile and identifies the additional mandatory core elements, extensions, vocabularies and value sets that SHALL be present in the Specimen when conforming to this profile. It provides the floor for standards development for specific uses cases in an Australian context.
Example usage scenarios
The following are example usage scenarios for this profile:
Profile specific implementation guidance
Usage:
Description of Profiles, Differentials, Snapshots and how the different presentations work.
This structure is derived from AUBaseSpecimen
Name | Flags | Card. | Type | Description & Constraints![]() |
---|---|---|---|---|
![]() ![]() | C | 0..* | AUBaseSpecimen | A specimen in an Australian healthcare context au-core-spc-04: The specimen shall at least have a valid identifier or method or type |
![]() ![]() ![]() | SC | 0..* | Identifier | External Identifier |
![]() ![]() ![]() | SC | 0..1 | Identifier | Identifier assigned by the lab |
![]() ![]() ![]() | SC | 0..1 | CodeableConcept | Kind of material that forms the specimen |
![]() ![]() ![]() | S | 1..1 | Reference(AU Core Patient) | Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device |
![]() ![]() ![]() | S | 0..* | Reference(AU Core ServiceRequest) | Why the specimen was collected |
![]() ![]() ![]() | S | 1..1 | BackboneElement | Collection details |
![]() ![]() ![]() ![]() | S | 0..1 | Reference(AU Core Practitioner | AU Core PractitionerRole) | Who collected the specimen |
![]() ![]() ![]() ![]() | S | 1..1 | dateTime, Period | Collection time |
![]() ![]() ![]() ![]() | SC | 0..1 | CodeableConcept | Technique used to perform collection |
![]() ![]() ![]() ![]() | SC | 0..1 | CodeableConcept | Anatomical collection site Binding: https://healthterminologies.gov.au/fhir/ValueSet/body-site-1 (extensible) au-core-spc-03: If a coded body site is provided, at least one code shall be from SNOMED CT |
![]() ![]() ![]() ![]() | S | 0..1 | CodeableConcept, Duration | Whether or how long patient abstained from food and/or drink |
![]() |
Path | Conformance | ValueSet |
Specimen.collection.bodySite | extensible | https://healthterminologies.gov.au/fhir/ValueSet/body-site-1 |
Id | Grade | Path(s) | Details | Requirements |
au-core-spc-03 | error | Specimen.collection.bodySite | If a coded body site is provided, at least one code shall be from SNOMED CT : coding.exists() implies coding.where(system='http://snomed.info/sct').exists() | |
au-core-spc-04 | error | Specimen | The specimen shall at least have a valid identifier or method or type : type.exists() or collection.method.exists() or identifier.where(system.count() + value.count() >1).exists() or accessionIdentifier.where(system.count() + value.count() >1).exists() |
Name | Flags | Card. | Type | Description & Constraints![]() |
---|---|---|---|---|
![]() ![]() | C | 0..* | AUBaseSpecimen | A specimen in an Australian healthcare context au-core-spc-04: The specimen shall at least have a valid identifier or method or type |
![]() ![]() ![]() | ?!Σ | 0..1 | uri | A set of rules under which this content was created |
![]() ![]() ![]() | ?! | 0..* | Extension | Extensions that cannot be ignored |
![]() ![]() ![]() | SΣC | 0..* | Identifier | External Identifier |
![]() ![]() ![]() | SΣC | 0..1 | Identifier | Identifier assigned by the lab |
![]() ![]() ![]() | ?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen. |
![]() ![]() ![]() | SΣC | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: https://healthterminologies.gov.au/fhir/ValueSet/specimen-type-1 (preferred) |
![]() ![]() ![]() | SΣ | 1..1 | Reference(AU Core Patient) | Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device |
![]() ![]() ![]() | S | 0..* | Reference(AU Core ServiceRequest) | Why the specimen was collected |
![]() ![]() ![]() | S | 1..1 | BackboneElement | Collection details |
![]() ![]() ![]() ![]() | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
![]() ![]() ![]() ![]() | SΣ | 0..1 | Reference(AU Core Practitioner | AU Core PractitionerRole) | Who collected the specimen |
![]() ![]() ![]() ![]() | SΣ | 1..1 | Collection time | |
![]() ![]() ![]() ![]() ![]() | dateTime | |||
![]() ![]() ![]() ![]() ![]() | Period | |||
![]() ![]() ![]() ![]() | SC | 0..1 | CodeableConcept | Technique used to perform collection Binding: https://healthterminologies.gov.au/fhir/ValueSet/specimen-collection-procedure-1 (preferred) |
![]() ![]() ![]() ![]() | SC | 0..1 | CodeableConcept | Anatomical collection site Binding: https://healthterminologies.gov.au/fhir/ValueSet/body-site-1 (extensible) au-core-spc-03: If a coded body site is provided, at least one code shall be from SNOMED CT |
![]() ![]() ![]() ![]() | SΣ | 0..1 | Whether or how long patient abstained from food and/or drink Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient. | |
![]() ![]() ![]() ![]() ![]() | CodeableConcept | |||
![]() ![]() ![]() ![]() ![]() | Duration | |||
![]() |
Path | Conformance | ValueSet |
Specimen.status | required | SpecimenStatus |
Specimen.type | preferred | https://healthterminologies.gov.au/fhir/ValueSet/specimen-type-1 |
Specimen.collection.method | preferred | https://healthterminologies.gov.au/fhir/ValueSet/specimen-collection-procedure-1 |
Specimen.collection.bodySite | extensible | https://healthterminologies.gov.au/fhir/ValueSet/body-site-1 |
Specimen.collection.fastingStatus[x] | extensible | Hl7VSRelevantClincialInformation |
Id | Grade | Path(s) | Details | Requirements |
au-core-spc-03 | error | Specimen.collection.bodySite | If a coded body site is provided, at least one code shall be from SNOMED CT : coding.exists() implies coding.where(system='http://snomed.info/sct').exists() | |
au-core-spc-04 | error | Specimen | The specimen shall at least have a valid identifier or method or type : type.exists() or collection.method.exists() or identifier.where(system.count() + value.count() >1).exists() or accessionIdentifier.where(system.count() + value.count() >1).exists() |
Name | Flags | Card. | Type | Description & Constraints![]() | ||||
---|---|---|---|---|---|---|---|---|
![]() ![]() | C | 0..* | AUBaseSpecimen | A specimen in an Australian healthcare context au-core-spc-04: The specimen shall at least have a valid identifier or method or type | ||||
![]() ![]() ![]() | Σ | 0..1 | id | Logical id of this artifact | ||||
![]() ![]() ![]() | Σ | 0..1 | Meta | Metadata about the resource | ||||
![]() ![]() ![]() | ?!Σ | 0..1 | uri | A set of rules under which this content was created | ||||
![]() ![]() ![]() | 0..1 | code | Language of the resource content Binding: CommonLanguages (preferred): A human language.
| |||||
![]() ![]() ![]() | 0..1 | Narrative | Text summary of the resource, for human interpretation | |||||
![]() ![]() ![]() | 0..* | Resource | Contained, inline Resources | |||||
![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() | ?! | 0..* | Extension | Extensions that cannot be ignored | ||||
![]() ![]() ![]() | SΣC | 0..* | Identifier | External Identifier | ||||
![]() ![]() ![]() | SΣC | 0..1 | Identifier | Identifier assigned by the lab | ||||
![]() ![]() ![]() | ?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen. | ||||
![]() ![]() ![]() | SΣC | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: https://healthterminologies.gov.au/fhir/ValueSet/specimen-type-1 (preferred) | ||||
![]() ![]() ![]() | SΣ | 1..1 | Reference(AU Core Patient) | Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device | ||||
![]() ![]() ![]() | Σ | 0..1 | dateTime | The time when specimen was received for processing | ||||
![]() ![]() ![]() | 0..* | Reference(AU Base Specimen) | Specimen from which this specimen originated | |||||
![]() ![]() ![]() | S | 0..* | Reference(AU Core ServiceRequest) | Why the specimen was collected | ||||
![]() ![]() ![]() | S | 1..1 | BackboneElement | Collection details | ||||
![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() | SΣ | 0..1 | Reference(AU Core Practitioner | AU Core PractitionerRole) | Who collected the specimen | ||||
![]() ![]() ![]() ![]() | SΣ | 1..1 | Collection time | |||||
![]() ![]() ![]() ![]() ![]() | dateTime | |||||||
![]() ![]() ![]() ![]() ![]() | Period | |||||||
![]() ![]() ![]() ![]() | Σ | 0..1 | Duration | How long it took to collect specimen | ||||
![]() ![]() ![]() ![]() | 0..1 | SimpleQuantity | The quantity of specimen collected | |||||
![]() ![]() ![]() ![]() | SC | 0..1 | CodeableConcept | Technique used to perform collection Binding: https://healthterminologies.gov.au/fhir/ValueSet/specimen-collection-procedure-1 (preferred) | ||||
![]() ![]() ![]() ![]() | SC | 0..1 | CodeableConcept | Anatomical collection site Binding: https://healthterminologies.gov.au/fhir/ValueSet/body-site-1 (extensible) au-core-spc-03: If a coded body site is provided, at least one code shall be from SNOMED CT | ||||
![]() ![]() ![]() ![]() | SΣ | 0..1 | Whether or how long patient abstained from food and/or drink Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient. | |||||
![]() ![]() ![]() ![]() ![]() | CodeableConcept | |||||||
![]() ![]() ![]() ![]() ![]() | Duration | |||||||
![]() ![]() ![]() | 0..* | BackboneElement | Processing and processing step details | |||||
![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() | 0..1 | string | Textual description of procedure | |||||
![]() ![]() ![]() ![]() | 0..1 | CodeableConcept | Indicates the treatment step applied to the specimen Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen. | |||||
![]() ![]() ![]() ![]() | 0..* | Reference(Substance) | Material used in the processing step | |||||
![]() ![]() ![]() ![]() | 0..1 | Date and time of specimen processing | ||||||
![]() ![]() ![]() ![]() ![]() | dateTime | |||||||
![]() ![]() ![]() ![]() ![]() | Period | |||||||
![]() ![]() ![]() | 0..* | BackboneElement | Direct container of specimen (tube/slide, etc.) | |||||
![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() | Σ | 0..* | Identifier | Id for the container | ||||
![]() ![]() ![]() ![]() | 0..1 | string | Textual description of the container | |||||
![]() ![]() ![]() ![]() | 0..1 | CodeableConcept | Kind of container directly associated with specimen Binding: SpecimenContainerType (example): Type of specimen container. | |||||
![]() ![]() ![]() ![]() | 0..1 | SimpleQuantity | Container volume or size | |||||
![]() ![]() ![]() ![]() | 0..1 | SimpleQuantity | Quantity of specimen within container | |||||
![]() ![]() ![]() ![]() | 0..1 | Additive associated with container Binding: hl7VS-additivePreservative (example): Substance added to specimen container. | ||||||
![]() ![]() ![]() ![]() ![]() | CodeableConcept | |||||||
![]() ![]() ![]() ![]() ![]() | Reference(Substance) | |||||||
![]() ![]() ![]() | Σ | 0..* | CodeableConcept | State of the specimen Binding: hl7VS-specimenCondition (extensible): Codes describing the state of the specimen. | ||||
![]() ![]() ![]() | 0..* | Annotation | Comments | |||||
![]() |
Path | Conformance | ValueSet | ||||
Specimen.language | preferred | CommonLanguages
| ||||
Specimen.status | required | SpecimenStatus | ||||
Specimen.type | preferred | https://healthterminologies.gov.au/fhir/ValueSet/specimen-type-1 | ||||
Specimen.collection.method | preferred | https://healthterminologies.gov.au/fhir/ValueSet/specimen-collection-procedure-1 | ||||
Specimen.collection.bodySite | extensible | https://healthterminologies.gov.au/fhir/ValueSet/body-site-1 | ||||
Specimen.collection.fastingStatus[x] | extensible | Hl7VSRelevantClincialInformation | ||||
Specimen.processing.procedure | example | SpecimenProcessingProcedure | ||||
Specimen.container.type | example | SpecimenContainerType | ||||
Specimen.container.additive[x] | example | Hl7VSAdditivePreservative | ||||
Specimen.condition | extensible | Hl7VSSpecimenCondition |
Id | Grade | Path(s) | Details | Requirements |
au-core-spc-03 | error | Specimen.collection.bodySite | If a coded body site is provided, at least one code shall be from SNOMED CT : coding.exists() implies coding.where(system='http://snomed.info/sct').exists() |
This structure is derived from AUBaseSpecimen
Summary
Mandatory: 3 elements
Must-Support: 11 elements
Structures
This structure refers to these other structures:
Maturity: 0
Differential View
This structure is derived from AUBaseSpecimen
Name | Flags | Card. | Type | Description & Constraints![]() |
---|---|---|---|---|
![]() ![]() | C | 0..* | AUBaseSpecimen | A specimen in an Australian healthcare context au-core-spc-04: The specimen shall at least have a valid identifier or method or type |
![]() ![]() ![]() | SC | 0..* | Identifier | External Identifier |
![]() ![]() ![]() | SC | 0..1 | Identifier | Identifier assigned by the lab |
![]() ![]() ![]() | SC | 0..1 | CodeableConcept | Kind of material that forms the specimen |
![]() ![]() ![]() | S | 1..1 | Reference(AU Core Patient) | Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device |
![]() ![]() ![]() | S | 0..* | Reference(AU Core ServiceRequest) | Why the specimen was collected |
![]() ![]() ![]() | S | 1..1 | BackboneElement | Collection details |
![]() ![]() ![]() ![]() | S | 0..1 | Reference(AU Core Practitioner | AU Core PractitionerRole) | Who collected the specimen |
![]() ![]() ![]() ![]() | S | 1..1 | dateTime, Period | Collection time |
![]() ![]() ![]() ![]() | SC | 0..1 | CodeableConcept | Technique used to perform collection |
![]() ![]() ![]() ![]() | SC | 0..1 | CodeableConcept | Anatomical collection site Binding: https://healthterminologies.gov.au/fhir/ValueSet/body-site-1 (extensible) au-core-spc-03: If a coded body site is provided, at least one code shall be from SNOMED CT |
![]() ![]() ![]() ![]() | S | 0..1 | CodeableConcept, Duration | Whether or how long patient abstained from food and/or drink |
![]() |
Path | Conformance | ValueSet |
Specimen.collection.bodySite | extensible | https://healthterminologies.gov.au/fhir/ValueSet/body-site-1 |
Id | Grade | Path(s) | Details | Requirements |
au-core-spc-03 | error | Specimen.collection.bodySite | If a coded body site is provided, at least one code shall be from SNOMED CT : coding.exists() implies coding.where(system='http://snomed.info/sct').exists() | |
au-core-spc-04 | error | Specimen | The specimen shall at least have a valid identifier or method or type : type.exists() or collection.method.exists() or identifier.where(system.count() + value.count() >1).exists() or accessionIdentifier.where(system.count() + value.count() >1).exists() |
Key Elements View
Name | Flags | Card. | Type | Description & Constraints![]() |
---|---|---|---|---|
![]() ![]() | C | 0..* | AUBaseSpecimen | A specimen in an Australian healthcare context au-core-spc-04: The specimen shall at least have a valid identifier or method or type |
![]() ![]() ![]() | ?!Σ | 0..1 | uri | A set of rules under which this content was created |
![]() ![]() ![]() | ?! | 0..* | Extension | Extensions that cannot be ignored |
![]() ![]() ![]() | SΣC | 0..* | Identifier | External Identifier |
![]() ![]() ![]() | SΣC | 0..1 | Identifier | Identifier assigned by the lab |
![]() ![]() ![]() | ?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen. |
![]() ![]() ![]() | SΣC | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: https://healthterminologies.gov.au/fhir/ValueSet/specimen-type-1 (preferred) |
![]() ![]() ![]() | SΣ | 1..1 | Reference(AU Core Patient) | Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device |
![]() ![]() ![]() | S | 0..* | Reference(AU Core ServiceRequest) | Why the specimen was collected |
![]() ![]() ![]() | S | 1..1 | BackboneElement | Collection details |
![]() ![]() ![]() ![]() | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized |
![]() ![]() ![]() ![]() | SΣ | 0..1 | Reference(AU Core Practitioner | AU Core PractitionerRole) | Who collected the specimen |
![]() ![]() ![]() ![]() | SΣ | 1..1 | Collection time | |
![]() ![]() ![]() ![]() ![]() | dateTime | |||
![]() ![]() ![]() ![]() ![]() | Period | |||
![]() ![]() ![]() ![]() | SC | 0..1 | CodeableConcept | Technique used to perform collection Binding: https://healthterminologies.gov.au/fhir/ValueSet/specimen-collection-procedure-1 (preferred) |
![]() ![]() ![]() ![]() | SC | 0..1 | CodeableConcept | Anatomical collection site Binding: https://healthterminologies.gov.au/fhir/ValueSet/body-site-1 (extensible) au-core-spc-03: If a coded body site is provided, at least one code shall be from SNOMED CT |
![]() ![]() ![]() ![]() | SΣ | 0..1 | Whether or how long patient abstained from food and/or drink Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient. | |
![]() ![]() ![]() ![]() ![]() | CodeableConcept | |||
![]() ![]() ![]() ![]() ![]() | Duration | |||
![]() |
Path | Conformance | ValueSet |
Specimen.status | required | SpecimenStatus |
Specimen.type | preferred | https://healthterminologies.gov.au/fhir/ValueSet/specimen-type-1 |
Specimen.collection.method | preferred | https://healthterminologies.gov.au/fhir/ValueSet/specimen-collection-procedure-1 |
Specimen.collection.bodySite | extensible | https://healthterminologies.gov.au/fhir/ValueSet/body-site-1 |
Specimen.collection.fastingStatus[x] | extensible | Hl7VSRelevantClincialInformation |
Id | Grade | Path(s) | Details | Requirements |
au-core-spc-03 | error | Specimen.collection.bodySite | If a coded body site is provided, at least one code shall be from SNOMED CT : coding.exists() implies coding.where(system='http://snomed.info/sct').exists() | |
au-core-spc-04 | error | Specimen | The specimen shall at least have a valid identifier or method or type : type.exists() or collection.method.exists() or identifier.where(system.count() + value.count() >1).exists() or accessionIdentifier.where(system.count() + value.count() >1).exists() |
Snapshot View
Name | Flags | Card. | Type | Description & Constraints![]() | ||||
---|---|---|---|---|---|---|---|---|
![]() ![]() | C | 0..* | AUBaseSpecimen | A specimen in an Australian healthcare context au-core-spc-04: The specimen shall at least have a valid identifier or method or type | ||||
![]() ![]() ![]() | Σ | 0..1 | id | Logical id of this artifact | ||||
![]() ![]() ![]() | Σ | 0..1 | Meta | Metadata about the resource | ||||
![]() ![]() ![]() | ?!Σ | 0..1 | uri | A set of rules under which this content was created | ||||
![]() ![]() ![]() | 0..1 | code | Language of the resource content Binding: CommonLanguages (preferred): A human language.
| |||||
![]() ![]() ![]() | 0..1 | Narrative | Text summary of the resource, for human interpretation | |||||
![]() ![]() ![]() | 0..* | Resource | Contained, inline Resources | |||||
![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() | ?! | 0..* | Extension | Extensions that cannot be ignored | ||||
![]() ![]() ![]() | SΣC | 0..* | Identifier | External Identifier | ||||
![]() ![]() ![]() | SΣC | 0..1 | Identifier | Identifier assigned by the lab | ||||
![]() ![]() ![]() | ?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen. | ||||
![]() ![]() ![]() | SΣC | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: https://healthterminologies.gov.au/fhir/ValueSet/specimen-type-1 (preferred) | ||||
![]() ![]() ![]() | SΣ | 1..1 | Reference(AU Core Patient) | Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device | ||||
![]() ![]() ![]() | Σ | 0..1 | dateTime | The time when specimen was received for processing | ||||
![]() ![]() ![]() | 0..* | Reference(AU Base Specimen) | Specimen from which this specimen originated | |||||
![]() ![]() ![]() | S | 0..* | Reference(AU Core ServiceRequest) | Why the specimen was collected | ||||
![]() ![]() ![]() | S | 1..1 | BackboneElement | Collection details | ||||
![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() | SΣ | 0..1 | Reference(AU Core Practitioner | AU Core PractitionerRole) | Who collected the specimen | ||||
![]() ![]() ![]() ![]() | SΣ | 1..1 | Collection time | |||||
![]() ![]() ![]() ![]() ![]() | dateTime | |||||||
![]() ![]() ![]() ![]() ![]() | Period | |||||||
![]() ![]() ![]() ![]() | Σ | 0..1 | Duration | How long it took to collect specimen | ||||
![]() ![]() ![]() ![]() | 0..1 | SimpleQuantity | The quantity of specimen collected | |||||
![]() ![]() ![]() ![]() | SC | 0..1 | CodeableConcept | Technique used to perform collection Binding: https://healthterminologies.gov.au/fhir/ValueSet/specimen-collection-procedure-1 (preferred) | ||||
![]() ![]() ![]() ![]() | SC | 0..1 | CodeableConcept | Anatomical collection site Binding: https://healthterminologies.gov.au/fhir/ValueSet/body-site-1 (extensible) au-core-spc-03: If a coded body site is provided, at least one code shall be from SNOMED CT | ||||
![]() ![]() ![]() ![]() | SΣ | 0..1 | Whether or how long patient abstained from food and/or drink Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient. | |||||
![]() ![]() ![]() ![]() ![]() | CodeableConcept | |||||||
![]() ![]() ![]() ![]() ![]() | Duration | |||||||
![]() ![]() ![]() | 0..* | BackboneElement | Processing and processing step details | |||||
![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() | 0..1 | string | Textual description of procedure | |||||
![]() ![]() ![]() ![]() | 0..1 | CodeableConcept | Indicates the treatment step applied to the specimen Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen. | |||||
![]() ![]() ![]() ![]() | 0..* | Reference(Substance) | Material used in the processing step | |||||
![]() ![]() ![]() ![]() | 0..1 | Date and time of specimen processing | ||||||
![]() ![]() ![]() ![]() ![]() | dateTime | |||||||
![]() ![]() ![]() ![]() ![]() | Period | |||||||
![]() ![]() ![]() | 0..* | BackboneElement | Direct container of specimen (tube/slide, etc.) | |||||
![]() ![]() ![]() ![]() | 0..1 | string | Unique id for inter-element referencing | |||||
![]() ![]() ![]() ![]() | 0..* | Extension | Additional content defined by implementations | |||||
![]() ![]() ![]() ![]() | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized | ||||
![]() ![]() ![]() ![]() | Σ | 0..* | Identifier | Id for the container | ||||
![]() ![]() ![]() ![]() | 0..1 | string | Textual description of the container | |||||
![]() ![]() ![]() ![]() | 0..1 | CodeableConcept | Kind of container directly associated with specimen Binding: SpecimenContainerType (example): Type of specimen container. | |||||
![]() ![]() ![]() ![]() | 0..1 | SimpleQuantity | Container volume or size | |||||
![]() ![]() ![]() ![]() | 0..1 | SimpleQuantity | Quantity of specimen within container | |||||
![]() ![]() ![]() ![]() | 0..1 | Additive associated with container Binding: hl7VS-additivePreservative (example): Substance added to specimen container. | ||||||
![]() ![]() ![]() ![]() ![]() | CodeableConcept | |||||||
![]() ![]() ![]() ![]() ![]() | Reference(Substance) | |||||||
![]() ![]() ![]() | Σ | 0..* | CodeableConcept | State of the specimen Binding: hl7VS-specimenCondition (extensible): Codes describing the state of the specimen. | ||||
![]() ![]() ![]() | 0..* | Annotation | Comments | |||||
![]() |
Path | Conformance | ValueSet | ||||
Specimen.language | preferred | CommonLanguages
| ||||
Specimen.status | required | SpecimenStatus | ||||
Specimen.type | preferred | https://healthterminologies.gov.au/fhir/ValueSet/specimen-type-1 | ||||
Specimen.collection.method | preferred | https://healthterminologies.gov.au/fhir/ValueSet/specimen-collection-procedure-1 | ||||
Specimen.collection.bodySite | extensible | https://healthterminologies.gov.au/fhir/ValueSet/body-site-1 | ||||
Specimen.collection.fastingStatus[x] | extensible | Hl7VSRelevantClincialInformation | ||||
Specimen.processing.procedure | example | SpecimenProcessingProcedure | ||||
Specimen.container.type | example | SpecimenContainerType | ||||
Specimen.container.additive[x] | example | Hl7VSAdditivePreservative | ||||
Specimen.condition | extensible | Hl7VSSpecimenCondition |
Id | Grade | Path(s) | Details | Requirements |
au-core-spc-03 | error | Specimen.collection.bodySite | If a coded body site is provided, at least one code shall be from SNOMED CT : coding.exists() implies coding.where(system='http://snomed.info/sct').exists() |
This structure is derived from AUBaseSpecimen
Summary
Mandatory: 3 elements
Must-Support: 11 elements
Structures
This structure refers to these other structures:
Maturity: 0
Other representations of profile: CSV, Excel, Schematron
Below is an overview of the mandatory and optional search parameters. FHIR search operations and the syntax used to describe the interactions is described here.
Name | Type | Conformance | Description | Path |
---|---|---|---|---|
TBD | TBD | TBD | TBD | TBD |
The following search parameters and search parameter combinations SHALL be supported:
The following search parameters and search parameter combinations SHOULD be supported: