AU Base Implementation Guide
6.0.0-draft - Draft

Publication Build: This will be filled in by the publication tooling

## Resource Profile: AU Base Specimen

Official URL: http://hl7.org.au/fhir/StructureDefinition/au-specimen | Version: 6.0.0-draft
Standards status: Trial-use | Maturity Level: 1 | Computable Name: AUBaseSpecimen
Copyright/Legal: HL7 Australia© 2018+; Licensed Under Creative Commons No Rights Reserved.

This profile defines a specimen structure that localises core concepts, including terminology, for use in an Australian context. The purpose of this profile is to provide national level agreement on core localised concepts. This profile does not force conformance to core localised concepts. It enables implementers and modellers to make their own rules, i.e. profiling, about how to support these concepts for specific implementation needs.

### Usage Notes

Usages:

- Refer to this Profile: AU Base DiagnosticReport, AU Base Diagnostic Request, AU Base Pathology Report, AU Base Pathology Result and AU Base Specimen
- Examples for this Profile: Specimen/serum

Changes since version 5.0.0:

- No changes

### Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

- Differential Table
- Key Elements Table
- Snapshot Table
- Statistics/References
- All

This structure is derived from Specimen

Name | Flags | Card. | Type | Description & Constraints Filter: Bindings Constraints Obligations
--- | --- | --- | --- | ---
Specimen |  | 0..* | Specimen | A specimen in an Australian healthcare context
type |  | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: Specimen Type (preferred)
parent |  | 0..* | Reference(AU Base Specimen) | Specimen from which this specimen originated
collection |  | 0..1 | BackboneElement | Collection details
method |  | 0..1 | CodeableConcept | Technique used to perform collection Binding: Specimen Collection Procedure (preferred)
bodySite |  | 0..1 | CodeableConcept | Anatomical collection site Binding: Body Site (preferred)
container |  | 0..* | BackboneElement | Direct container of specimen (tube/slide, etc.) Binding: Specimen Container Type (preferred)
Documentation for this format

#### Terminology Bindings (Differential)

Path | Conformance | ValueSet | URI
Specimen.type | preferred | SpecimenType `https://healthterminologies.gov.au/fhir/ValueSet/specimen-type-1` From https://tx.ontoserver.csiro.au/fhir
Specimen.collection.method | preferred | SpecimenCollectionProcedure `https://healthterminologies.gov.au/fhir/ValueSet/specimen-collection-procedure-1` From https://tx.ontoserver.csiro.au/fhir
Specimen.collection.bodySite | preferred | BodySite `https://healthterminologies.gov.au/fhir/ValueSet/body-site-1` From https://tx.ontoserver.csiro.au/fhir
Specimen.container | preferred | SpecimenContainerType `https://healthterminologies.gov.au/fhir/ValueSet/specimen-container-type-1` From https://tx.ontoserver.csiro.au/fhir

Name | Flags | Card. | Type | Description & Constraints Filter: Bindings Constraints Obligations
--- | --- | --- | --- | ---
Specimen |  | 0..* | Specimen | A specimen in an Australian healthcare context
implicitRules | ?!Σ | 0..1 | uri | A set of rules under which this content was created
modifierExtension | ?! | 0..* | Extension | Extensions that cannot be ignored
status | ?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
type | Σ | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: Specimen Type (preferred)
parent |  | 0..* | Reference(AU Base Specimen) | Specimen from which this specimen originated
collection |  | 0..1 | BackboneElement | Collection details
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized
method |  | 0..1 | CodeableConcept | Technique used to perform collection Binding: Specimen Collection Procedure (preferred)
bodySite |  | 0..1 | CodeableConcept | Anatomical collection site Binding: Body Site (preferred)
container |  | 0..* | BackboneElement | Direct container of specimen (tube/slide, etc.)
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized
Documentation for this format

#### Terminology Bindings

Path | Conformance | ValueSet | URI
Specimen.status | required | SpecimenStatus `http://hl7.org/fhir/ValueSet/specimen-status|4.0.1` From the FHIR Standard
Specimen.type | preferred | SpecimenType `https://healthterminologies.gov.au/fhir/ValueSet/specimen-type-1` From https://tx.ontoserver.csiro.au/fhir
Specimen.collection.method | preferred | SpecimenCollectionProcedure `https://healthterminologies.gov.au/fhir/ValueSet/specimen-collection-procedure-1` From https://tx.ontoserver.csiro.au/fhir
Specimen.collection.bodySite | preferred | BodySite `https://healthterminologies.gov.au/fhir/ValueSet/body-site-1` From https://tx.ontoserver.csiro.au/fhir

#### Constraints

Id | Grade | Path(s) | Details | Requirements
dom-2 | error | Specimen | If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty() |
dom-3 | error | Specimen | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty() |
dom-4 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty() |
dom-5 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty() |
dom-6 | best practice | Specimen | A resource should have narrative for robust management : text.`div`.exists() |
ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) |
ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both : extension.exists() != value.exists() |

Name | Flags | Card. | Type | Description & Constraints Filter: Bindings Constraints Obligations
--- | --- | --- | --- | ---
Specimen |  | 0..* | Specimen | A specimen in an Australian healthcare context
id | Σ | 0..1 | id | Logical id of this artifact
meta | Σ | 0..1 | Meta | Metadata about the resource
implicitRules | ?!Σ | 0..1 | uri | A set of rules under which this content was created
language |  | 0..1 | code | Language of the resource content Binding: CommonLanguages (preferred): A human language.
Additional Bindings | Purpose
AllLanguages | Max Binding
text |  | 0..1 | Narrative | Text summary of the resource, for human interpretation This profile does not constrain the narrative in regard to content, language, or traceability to data elements
contained |  | 0..* | Resource | Contained, inline Resources
extension |  | 0..* | Extension | Additional content defined by implementations
modifierExtension | ?! | 0..* | Extension | Extensions that cannot be ignored
identifier | Σ | 0..* | Identifier | External Identifier
accessionIdentifier | Σ | 0..1 | Identifier | Identifier assigned by the lab
status | ?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
type | Σ | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: Specimen Type (preferred)
subject | Σ | 0..1 | Reference(Patient | Group | Device | Substance | Location) | Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device
receivedTime | Σ | 0..1 | dateTime | The time when specimen was received for processing
parent |  | 0..* | Reference(AU Base Specimen) | Specimen from which this specimen originated
request |  | 0..* | Reference(ServiceRequest) | Why the specimen was collected
collection |  | 0..1 | BackboneElement | Collection details
id |  | 0..1 | string | Unique id for inter-element referencing
extension |  | 0..* | Extension | Additional content defined by implementations
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized
collector | Σ | 0..1 | Reference(Practitioner | PractitionerRole) | Who collected the specimen
collected[x] | Σ | 0..1 |  | Collection time
collectedDateTime |  |  | dateTime |
collectedPeriod |  |  | Period |
duration | Σ | 0..1 | Duration | How long it took to collect specimen
quantity |  | 0..1 | SimpleQuantity | The quantity of specimen collected
method |  | 0..1 | CodeableConcept | Technique used to perform collection Binding: Specimen Collection Procedure (preferred)
bodySite |  | 0..1 | CodeableConcept | Anatomical collection site Binding: Body Site (preferred)
fastingStatus[x] | Σ | 0..1 |  | Whether or how long patient abstained from food and/or drink Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient.
fastingStatusCodeableConcept |  |  | CodeableConcept |
fastingStatusDuration |  |  | Duration |
processing |  | 0..* | BackboneElement | Processing and processing step details
id |  | 0..1 | string | Unique id for inter-element referencing
extension |  | 0..* | Extension | Additional content defined by implementations
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized
description |  | 0..1 | string | Textual description of procedure
procedure |  | 0..1 | CodeableConcept | Indicates the treatment step applied to the specimen Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen.
additive |  | 0..* | Reference(Substance) | Material used in the processing step
time[x] |  | 0..1 |  | Date and time of specimen processing
timeDateTime |  |  | dateTime |
timePeriod |  |  | Period |
container |  | 0..* | BackboneElement | Direct container of specimen (tube/slide, etc.)
id |  | 0..1 | string | Unique id for inter-element referencing
extension |  | 0..* | Extension | Additional content defined by implementations
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized
identifier | Σ | 0..* | Identifier | Id for the container
description |  | 0..1 | string | Textual description of the container
type |  | 0..1 | CodeableConcept | Kind of container directly associated with specimen Binding: SpecimenContainerType (example): Type of specimen container.
capacity |  | 0..1 | SimpleQuantity | Container volume or size
specimenQuantity |  | 0..1 | SimpleQuantity | Quantity of specimen within container
additive[x] |  | 0..1 |  | Additive associated with container Binding: hl7VS-additivePreservative (example): Substance added to specimen container.
additiveCodeableConcept |  |  | CodeableConcept |
additiveReference |  |  | Reference(Substance) |
condition | Σ | 0..* | CodeableConcept | State of the specimen Binding: hl7VS-specimenCondition (extensible): Codes describing the state of the specimen.
note |  | 0..* | Annotation | Comments
Documentation for this format

#### Terminology Bindings

Path | Conformance | ValueSet | URI
Specimen.language | preferred | CommonLanguages `http://hl7.org/fhir/ValueSet/languages` From the FHIR Standard
Additional Bindings | Purpose
AllLanguages | Max Binding
Specimen.status | required | SpecimenStatus `http://hl7.org/fhir/ValueSet/specimen-status|4.0.1` From the FHIR Standard
Specimen.type | preferred | SpecimenType `https://healthterminologies.gov.au/fhir/ValueSet/specimen-type-1` From https://tx.ontoserver.csiro.au/fhir
Specimen.collection.method | preferred | SpecimenCollectionProcedure `https://healthterminologies.gov.au/fhir/ValueSet/specimen-collection-procedure-1` From https://tx.ontoserver.csiro.au/fhir
Specimen.collection.bodySite | preferred | BodySite `https://healthterminologies.gov.au/fhir/ValueSet/body-site-1` From https://tx.ontoserver.csiro.au/fhir
Specimen.collection.fastingStatus[x] | extensible | Hl7VSRelevantClincialInformation `http://terminology.hl7.org/ValueSet/v2-0916`
Specimen.processing.procedure | example | SpecimenProcessingProcedure `http://hl7.org/fhir/ValueSet/specimen-processing-procedure` From the FHIR Standard
Specimen.container.type | example | SpecimenContainerType `http://hl7.org/fhir/ValueSet/specimen-container-type` From the FHIR Standard
Specimen.container.additive[x] | example | Hl7VSAdditivePreservative `http://terminology.hl7.org/ValueSet/v2-0371`
Specimen.condition | extensible | Hl7VSSpecimenCondition `http://terminology.hl7.org/ValueSet/v2-0493`

#### Constraints

Id | Grade | Path(s) | Details | Requirements
dom-2 | error | Specimen | If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty() |
dom-3 | error | Specimen | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty() |
dom-4 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty() |
dom-5 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty() |
dom-6 | best practice | Specimen | A resource should have narrative for robust management : text.`div`.exists() |
ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) |
ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both : extension.exists() != value.exists() |

This structure is derived from Specimen

Summary

Structures

This structure refers to these other structures:

- AU Base Specimen (http://hl7.org.au/fhir/StructureDefinition/au-specimen)

Maturity: 1

Differential View

This structure is derived from Specimen

Name | Flags | Card. | Type | Description & Constraints Filter: Bindings Constraints Obligations
--- | --- | --- | --- | ---
Specimen |  | 0..* | Specimen | A specimen in an Australian healthcare context
type |  | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: Specimen Type (preferred)
parent |  | 0..* | Reference(AU Base Specimen) | Specimen from which this specimen originated
collection |  | 0..1 | BackboneElement | Collection details
method |  | 0..1 | CodeableConcept | Technique used to perform collection Binding: Specimen Collection Procedure (preferred)
bodySite |  | 0..1 | CodeableConcept | Anatomical collection site Binding: Body Site (preferred)
container |  | 0..* | BackboneElement | Direct container of specimen (tube/slide, etc.) Binding: Specimen Container Type (preferred)
Documentation for this format

#### Terminology Bindings (Differential)

Path | Conformance | ValueSet | URI
Specimen.type | preferred | SpecimenType `https://healthterminologies.gov.au/fhir/ValueSet/specimen-type-1` From https://tx.ontoserver.csiro.au/fhir
Specimen.collection.method | preferred | SpecimenCollectionProcedure `https://healthterminologies.gov.au/fhir/ValueSet/specimen-collection-procedure-1` From https://tx.ontoserver.csiro.au/fhir
Specimen.collection.bodySite | preferred | BodySite `https://healthterminologies.gov.au/fhir/ValueSet/body-site-1` From https://tx.ontoserver.csiro.au/fhir
Specimen.container | preferred | SpecimenContainerType `https://healthterminologies.gov.au/fhir/ValueSet/specimen-container-type-1` From https://tx.ontoserver.csiro.au/fhir

Key Elements View

Name | Flags | Card. | Type | Description & Constraints Filter: Bindings Constraints Obligations
--- | --- | --- | --- | ---
Specimen |  | 0..* | Specimen | A specimen in an Australian healthcare context
implicitRules | ?!Σ | 0..1 | uri | A set of rules under which this content was created
modifierExtension | ?! | 0..* | Extension | Extensions that cannot be ignored
status | ?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
type | Σ | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: Specimen Type (preferred)
parent |  | 0..* | Reference(AU Base Specimen) | Specimen from which this specimen originated
collection |  | 0..1 | BackboneElement | Collection details
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized
method |  | 0..1 | CodeableConcept | Technique used to perform collection Binding: Specimen Collection Procedure (preferred)
bodySite |  | 0..1 | CodeableConcept | Anatomical collection site Binding: Body Site (preferred)
container |  | 0..* | BackboneElement | Direct container of specimen (tube/slide, etc.)
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized
Documentation for this format

#### Terminology Bindings

Path | Conformance | ValueSet | URI
Specimen.status | required | SpecimenStatus `http://hl7.org/fhir/ValueSet/specimen-status|4.0.1` From the FHIR Standard
Specimen.type | preferred | SpecimenType `https://healthterminologies.gov.au/fhir/ValueSet/specimen-type-1` From https://tx.ontoserver.csiro.au/fhir
Specimen.collection.method | preferred | SpecimenCollectionProcedure `https://healthterminologies.gov.au/fhir/ValueSet/specimen-collection-procedure-1` From https://tx.ontoserver.csiro.au/fhir
Specimen.collection.bodySite | preferred | BodySite `https://healthterminologies.gov.au/fhir/ValueSet/body-site-1` From https://tx.ontoserver.csiro.au/fhir

#### Constraints

Id | Grade | Path(s) | Details | Requirements
dom-2 | error | Specimen | If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty() |
dom-3 | error | Specimen | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty() |
dom-4 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty() |
dom-5 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty() |
dom-6 | best practice | Specimen | A resource should have narrative for robust management : text.`div`.exists() |
ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) |
ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both : extension.exists() != value.exists() |

Snapshot View

Name | Flags | Card. | Type | Description & Constraints Filter: Bindings Constraints Obligations
--- | --- | --- | --- | ---
Specimen |  | 0..* | Specimen | A specimen in an Australian healthcare context
id | Σ | 0..1 | id | Logical id of this artifact
meta | Σ | 0..1 | Meta | Metadata about the resource
implicitRules | ?!Σ | 0..1 | uri | A set of rules under which this content was created
language |  | 0..1 | code | Language of the resource content Binding: CommonLanguages (preferred): A human language.
Additional Bindings | Purpose
AllLanguages | Max Binding
text |  | 0..1 | Narrative | Text summary of the resource, for human interpretation This profile does not constrain the narrative in regard to content, language, or traceability to data elements
contained |  | 0..* | Resource | Contained, inline Resources
extension |  | 0..* | Extension | Additional content defined by implementations
modifierExtension | ?! | 0..* | Extension | Extensions that cannot be ignored
identifier | Σ | 0..* | Identifier | External Identifier
accessionIdentifier | Σ | 0..1 | Identifier | Identifier assigned by the lab
status | ?!Σ | 0..1 | code | available | unavailable | unsatisfactory | entered-in-error Binding: SpecimenStatus (required): Codes providing the status/availability of a specimen.
type | Σ | 0..1 | CodeableConcept | Kind of material that forms the specimen Binding: Specimen Type (preferred)
subject | Σ | 0..1 | Reference(Patient | Group | Device | Substance | Location) | Where the specimen came from. This may be from patient(s), from a location (e.g., the source of an environmental sample), or a sampling of a substance or a device
receivedTime | Σ | 0..1 | dateTime | The time when specimen was received for processing
parent |  | 0..* | Reference(AU Base Specimen) | Specimen from which this specimen originated
request |  | 0..* | Reference(ServiceRequest) | Why the specimen was collected
collection |  | 0..1 | BackboneElement | Collection details
id |  | 0..1 | string | Unique id for inter-element referencing
extension |  | 0..* | Extension | Additional content defined by implementations
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized
collector | Σ | 0..1 | Reference(Practitioner | PractitionerRole) | Who collected the specimen
collected[x] | Σ | 0..1 |  | Collection time
collectedDateTime |  |  | dateTime |
collectedPeriod |  |  | Period |
duration | Σ | 0..1 | Duration | How long it took to collect specimen
quantity |  | 0..1 | SimpleQuantity | The quantity of specimen collected
method |  | 0..1 | CodeableConcept | Technique used to perform collection Binding: Specimen Collection Procedure (preferred)
bodySite |  | 0..1 | CodeableConcept | Anatomical collection site Binding: Body Site (preferred)
fastingStatus[x] | Σ | 0..1 |  | Whether or how long patient abstained from food and/or drink Binding: hl7VS-relevantClincialInformation (extensible): Codes describing the fasting status of the patient.
fastingStatusCodeableConcept |  |  | CodeableConcept |
fastingStatusDuration |  |  | Duration |
processing |  | 0..* | BackboneElement | Processing and processing step details
id |  | 0..1 | string | Unique id for inter-element referencing
extension |  | 0..* | Extension | Additional content defined by implementations
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized
description |  | 0..1 | string | Textual description of procedure
procedure |  | 0..1 | CodeableConcept | Indicates the treatment step applied to the specimen Binding: SpecimenProcessingProcedure (example): Type indicating the technique used to process the specimen.
additive |  | 0..* | Reference(Substance) | Material used in the processing step
time[x] |  | 0..1 |  | Date and time of specimen processing
timeDateTime |  |  | dateTime |
timePeriod |  |  | Period |
container |  | 0..* | BackboneElement | Direct container of specimen (tube/slide, etc.)
id |  | 0..1 | string | Unique id for inter-element referencing
extension |  | 0..* | Extension | Additional content defined by implementations
modifierExtension | ?!Σ | 0..* | Extension | Extensions that cannot be ignored even if unrecognized
identifier | Σ | 0..* | Identifier | Id for the container
description |  | 0..1 | string | Textual description of the container
type |  | 0..1 | CodeableConcept | Kind of container directly associated with specimen Binding: SpecimenContainerType (example): Type of specimen container.
capacity |  | 0..1 | SimpleQuantity | Container volume or size
specimenQuantity |  | 0..1 | SimpleQuantity | Quantity of specimen within container
additive[x] |  | 0..1 |  | Additive associated with container Binding: hl7VS-additivePreservative (example): Substance added to specimen container.
additiveCodeableConcept |  |  | CodeableConcept |
additiveReference |  |  | Reference(Substance) |
condition | Σ | 0..* | CodeableConcept | State of the specimen Binding: hl7VS-specimenCondition (extensible): Codes describing the state of the specimen.
note |  | 0..* | Annotation | Comments
Documentation for this format

#### Terminology Bindings

Path | Conformance | ValueSet | URI
Specimen.language | preferred | CommonLanguages `http://hl7.org/fhir/ValueSet/languages` From the FHIR Standard
Additional Bindings | Purpose
AllLanguages | Max Binding
Specimen.status | required | SpecimenStatus `http://hl7.org/fhir/ValueSet/specimen-status|4.0.1` From the FHIR Standard
Specimen.type | preferred | SpecimenType `https://healthterminologies.gov.au/fhir/ValueSet/specimen-type-1` From https://tx.ontoserver.csiro.au/fhir
Specimen.collection.method | preferred | SpecimenCollectionProcedure `https://healthterminologies.gov.au/fhir/ValueSet/specimen-collection-procedure-1` From https://tx.ontoserver.csiro.au/fhir
Specimen.collection.bodySite | preferred | BodySite `https://healthterminologies.gov.au/fhir/ValueSet/body-site-1` From https://tx.ontoserver.csiro.au/fhir
Specimen.collection.fastingStatus[x] | extensible | Hl7VSRelevantClincialInformation `http://terminology.hl7.org/ValueSet/v2-0916`
Specimen.processing.procedure | example | SpecimenProcessingProcedure `http://hl7.org/fhir/ValueSet/specimen-processing-procedure` From the FHIR Standard
Specimen.container.type | example | SpecimenContainerType `http://hl7.org/fhir/ValueSet/specimen-container-type` From the FHIR Standard
Specimen.container.additive[x] | example | Hl7VSAdditivePreservative `http://terminology.hl7.org/ValueSet/v2-0371`
Specimen.condition | extensible | Hl7VSSpecimenCondition `http://terminology.hl7.org/ValueSet/v2-0493`

#### Constraints

Id | Grade | Path(s) | Details | Requirements
dom-2 | error | Specimen | If the resource is contained in another resource, it SHALL NOT contain nested Resources : contained.contained.empty() |
dom-3 | error | Specimen | If the resource is contained in another resource, it SHALL be referred to from elsewhere in the resource or SHALL refer to the containing resource : contained.where((('#'+id in (%resource.descendants().reference | %resource.descendants().as(canonical) | %resource.descendants().as(uri) | %resource.descendants().as(url))) or descendants().where(reference = '#').exists() or descendants().where(as(canonical) = '#').exists() or descendants().where(as(canonical) = '#').exists()).not()).trace('unmatched', id).empty() |
dom-4 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a meta.versionId or a meta.lastUpdated : contained.meta.versionId.empty() and contained.meta.lastUpdated.empty() |
dom-5 | error | Specimen | If a resource is contained in another resource, it SHALL NOT have a security label : contained.meta.security.empty() |
dom-6 | best practice | Specimen | A resource should have narrative for robust management : text.`div`.exists() |
ele-1 | error | **ALL** elements | All FHIR elements must have a @value or children : hasValue() or (children().count() > id.count()) |
ext-1 | error | **ALL** extensions | Must have either extensions or value[x], not both : extension.exists() != value.exists() |

This structure is derived from Specimen

Summary

Structures

This structure refers to these other structures:

- AU Base Specimen (http://hl7.org.au/fhir/StructureDefinition/au-specimen)

Maturity: 1

Other representations of profile: CSV, Excel, Schematron